![]() This produces a montage with results from all the methods, so one can explore how the different algorithms perform on an image or stack. Which method segments your data best? You can attempt to answer this question using the Try all option. It you are processing a stack, one additional option is available: Stack can be used to process all the slices. Those are detailed below for each method. Special parameters 1 and 2 sets specific values for each method. White object on black background sets to white the pixels with values above the threshold value (otherwise, it sets to white the values less or equal to the threshold). The radius sets the radius of the local domain over which the threshold will be computed. ![]() Method selects the algorithm to be applied (detailed below). After this a new command should appear in Image › Adjust › Auto Local Threshold.įiji: this plugin is part of the Fiji distribution, there is no need to download it. Download Auto_Threshold-X.Y.Z.jar and copy it into the ImageJ/plugins folder and either restart ImageJ or run the Help › Update Menus command. The segmented phase is always shown as white (255).įor global thresholding rather than local, see the Auto Threshold plugin. By ‘local’ here is meant that the threshold is computed for each pixel according to the image characteristings within a window of radius r (in pixel units) around it. This plugin binarises 8-bit images using various local thresholding methods. ![]() If you’d like to help, check out the how to help guide! The content of this page has not been vetted since shifting away from MediaWiki. ![]()
0 Comments
Leave a Reply. |